[an error occurred while processing this directive]<meta name="keywords" content="Department of Computer Science, publications, by title, Chaste: Developing software for realistic heart simulations"></meta><meta name="description" content="Publications, by title,Chaste: Developing software for realistic heart simulations, Department of Computer Science, Oxford"></meta><title>Department of Computer Science: Chaste: Publications
</title><style type="text/css">
			  .btn-toolbar::after, .btn-toolbar::before
			  {
			    content: " ";
			    display: table;
			  }

			
			.btn-toolbar
			{
			    margin-bottom: 2em;
			}

			  .btn-toolbar::after, .btn-group::after
			  {
			    clear: both;
			  }


			.btn-toolbar .btn, .btn-toolbar .btn-group
			  {
			    float: left;
			}
			
			.btn-group
			  {
			    display: inline-block;
			    position: relative;
			    vertical-align: middle;
			}

			  .btn-group > .btn:first-child:not(:last-child)
			  {
			    border-bottom-right-radius: 0;
			    border-top-right-radius: 0;
			}
			
			.btn-group > .btn:first-child
			  {
			    margin-left: 0;
			}

			.btn-group > .btn
			  {
			    float: left;
			    position: relative;
			}

			  .btn-group > .btn:not(:first-child):not(:last-child)
			  {
			    border-radius: 0;
			}
			
			  .btn-group > .btn:last-child:not(:first-child)
			  {
			    border-bottom-left-radius: 0;
			    border-top-left-radius: 0;
			}
			
			.btn-group .btn + .btn, .btn-group .btn + .btn-group, .btn-group .btn-group + .btn, .btn-group .btn-group + .btn-group
			  {
			    margin-left: -2px;
			}
			</style>[an error occurred while processing this directive]<div class="content-width"><ol class="breadcrumb text-uppercase"><li><a href="/">Home</a></li><li><a href="/research/">Research</a></li><li><a href="/research/compbio/">Computational Biology and Health Informatics</a></li><li><a href="/research/compbio/projects.html">projects</a></li><li><a href="/projects/chaste-cardiac-hpc/">Chaste</a></li><li class="active">Publications</li></ol></div><!-- MOBILE NAVIGATION --><div class="content-width space-below mobile-menu-placeholder visible-xs visible-sm"></div><!-- COLUMNS --><div class="container-fluid content-width"><div class="row"><div class="col-xs-12 col-md-9 col-md-push-3" id="maincontent"><!-- CONTENT (Column 2) --><div class="page-title"><h1>Chaste: Publications
</h1></div><div role="toolbar" class="btn-toolbar"><div class="btn-group"><a href="/projects/publications/date/chaste-cardiac-hpc.html" aria-hidden="true" type="button" class="btn btn-default"><span class="glyphicon glyphicon-sort-by-attributes"></span> By date</a><a href="/projects/publications/title/chaste-cardiac-hpc.html" aria-hidden="true" type="button" class="btn btn-oxford-blue"><span class="glyphicon glyphicon-sort-by-attributes"></span> By title</a><a href="/projects/publications/type/chaste-cardiac-hpc.html" aria-hidden="true" type="button" class="btn btn-default"><span class="glyphicon glyphicon-sort-by-attributes"></span> By type</a><a href="/projects/publications/bibtex/chaste-cardiac-hpc.html" aria-hidden="true" type="button" class="btn btn-default"><span class="glyphicon glyphicon-file"></span> BibTex</a></div></div><ul class="list-unbulleted list-unbulleted-spaced"><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[1] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            A computational study of discrete mechanical tissue models </strong> </p>
	    <p class="publicationAuthors"> <em> P Pathmanathan&#x201a; J Cooper&#x201a; A Fletcher&#x201a; G Mirams&#x201a; P Murray&#x201a; J Osborne&#x201a; J Pitt&#x2212;Francis&#x201a; A Walter and S J Chapman  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Physical Biology</em>.
        
            Vol. 6.
        
            No. 3.
        2009.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication3106-abstract.html">
			Details <span class="sr-only" > about <em> A computational study of discrete mechanical tissue models  </em></span> </a> |
			<a href="/publications/publication3106.bib">
			BibTeX  <span class="sr-only" > data for <em> A computational study of discrete mechanical tissue models  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.1088/1478-3975/6/3/036001">
		DOI (10.1088/1478-3975/6/3/036001)
		</a> 
		
		</div> 
	</div> 
	
        </li><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[2] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            An integrative computational model for intestinal tissue renewal </strong> </p>
	    <p class="publicationAuthors"> <em> Van Leeuwen&#x201a; Ingeborg MM&#x201a; GR Mirams&#x201a; Alex Walter&#x201a; A Fletcher&#x201a; P Murray&#x201a; J Osborne&#x201a; S Varma&#x201a; SJ Young&#x201a; J Cooper&#x201a; B Doyle and others  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Cell proliferation</em>.
        
            Vol. 42.
        
            No. 5.
        
                Pages 617&#x2013;636.
            2009.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication2848-abstract.html">
			Details <span class="sr-only" > about <em> An integrative computational model for intestinal tissue renewal  </em></span> </a> |
			<a href="/publications/publication2848.bib">
			BibTeX  <span class="sr-only" > data for <em> An integrative computational model for intestinal tissue renewal  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.1111/j.1365-2184.2009.00627.x">
		DOI (10.1111/j.1365-2184.2009.00627.x)
		</a> 
		
		</div> 
	</div> 
	
        </li><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[3] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            Cellular cardiac electrophysiology modelling with Chaste and CellML </strong> </p>
	    <p class="publicationAuthors"> <em> Jonathan Cooper&#x201a; Raymond Spiteri and Gary Mirams  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Frontiers in Physiology</em>.
        
            Vol. 5.
        
                Pages 511.
            January,
            2015.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication9126-abstract.html">
			Details <span class="sr-only" > about <em> Cellular cardiac electrophysiology modelling with Chaste and CellML  </em></span> </a> |
			<a href="/publications/publication9126.bib">
			BibTeX  <span class="sr-only" > data for <em> Cellular cardiac electrophysiology modelling with Chaste and CellML  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.3389/fphys.2014.00511">
		DOI (10.3389/fphys.2014.00511)
		</a> 
					| <a href="http://journal.frontiersin.org/Journal/10.3389/fphys.2014.00511"> Link <span class="sr-only" > to <em> Cellular cardiac electrophysiology modelling with Chaste and CellML  </em></span> </a>
  				
		
		</div> 
	</div> 
	
        </li><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[4] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library </strong> </p>
	    <p class="publicationAuthors"> <em> M.O. Bernabeu&#x201a; R. Bordas&#x201a; P. Pathmanathan&#x201a; J. Pitt&#x2212;Francis&#x201a; J. Cooper&#x201a; A. Garny&#x201a; D.J. Gavaghan&#x201a; B. Rodriguez&#x201a; J.A. Southern and J.P. Whiteley  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Phil Trans Roy Soc (A)</em>.
        
            Vol. 367.
        
            No. 1895.
        
                Pages 1907&#x2212;1930.
            May,
            2009.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication2843-abstract.html">
			Details <span class="sr-only" > about <em> Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library  </em></span> </a> |
			<a href="/publications/publication2843.bib">
			BibTeX  <span class="sr-only" > data for <em> Chaste: Incorporating a Novel Multiscale Spatial and Temporal Algorithm into a Large Scale Open Source Library  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.1098/rsta.2008.0309">
		DOI (10.1098/rsta.2008.0309)
		</a> 
		
		</div> 
	</div> 
	
        </li><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[5] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            Chaste: a test&#x2212;driven approach to software development for biological modelling </strong> </p>
	    <p class="publicationAuthors"> <em> Joe Pitt&#x2212;Francis&#x201a; Pras Pathmanathan&#x201a; Miguel O Bernabeu&#x201a; Rafel Bordas&#x201a; Jonathan Cooper&#x201a; Alexander G Fletcher&#x201a; Gary R Mirams&#x201a; Philip Murray&#x201a; James M Osborne&#x201a; Alex Walter and others  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Computer Physics Communications</em>.
        
            Vol. 180.
        
            No. 12.
        
                Pages 2452&#x2013;2471.
            2009.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication3197-abstract.html">
			Details <span class="sr-only" > about <em> Chaste: a test&#x2212;driven approach to software development for biological modelling  </em></span> </a> |
			<a href="/publications/publication3197.bib">
			BibTeX  <span class="sr-only" > data for <em> Chaste: a test&#x2212;driven approach to software development for biological modelling  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.1016/j.cpc.2009.07.019">
		DOI (10.1016/j.cpc.2009.07.019)
		</a> 
		
		</div> 
	</div> 
	
        </li><li>
	
	<div class="row">
		
			<div class="col-xs-1 text-right">
				[6] 
			</div>

		
        
		<div
			class="col-xs-11"
		>
			
	
	<p class="publicationTitle"> <strong>
            Chaste: using agile programming techniques to develop computational biology software </strong> </p>
	    <p class="publicationAuthors"> <em> Joe Pitt&#x2212;Francis&#x201a; Miguel O Bernabeu&#x201a; Jonathan Cooper&#x201a; Alan Garny&#x201a; Lee Momtahan&#x201a; James Osborne&#x201a; Pras Pathmanathan&#x201a; Blanca Rodriguez&#x201a; Jonathan P Whiteley and David J Gavaghan  </em> </p>
	
	<p class="publicationDetails"> 
        In <em>Philosophical Transactions of the Royal Society A: Mathematical&#x201a; Physical and Engineering Sciences</em>.
        
            Vol. 366.
        
            No. 1878.
        
                Pages 3111&#x2013;3136.
            2008.
        </p>
	
        		<p class="publicationlinks"> <a
        
            		href="/publications/publication3274-abstract.html">
			Details <span class="sr-only" > about <em> Chaste: using agile programming techniques to develop computational biology software  </em></span> </a> |
			<a href="/publications/publication3274.bib">
			BibTeX  <span class="sr-only" > data for <em> Chaste: using agile programming techniques to develop computational biology software  </em></span>   </a>
			
			 | <a
		href="http://dx.doi.org/10.1098/rsta.2008.0096">
		DOI (10.1098/rsta.2008.0096)
		</a> 
		
		</div> 
	</div> 
	
        </li></ul></div><div class="col-xs-12 col-md-3 col-md-pull-9 side-menu-col">[an error occurred while processing this directive]</div></div></div>[an error occurred while processing this directive]